:            EUKARYOTIC DNA SEQUENCES REGULATING TRANSCRIPTION
:
: Bases:   A,C,G,T, N=any base, Y=pyrimidine,  R=purine, M=A or C,
:           K=G or T, S=G or C, W=A or T, H=A, C or T, B=G, T or C,
:           V=G, C or A, D=G, A or T.
:
:
:  Comment Lines:  must begin with non-alphabetic characters in column 1.
:
:  Data Lines:  must begin with an integer (i.e. the number of bases in the
:               recognition site).
:
:REFS.:  TATA & CCAAT Sites-
:        Chambon, Science 209:1411(1980).
:        O'Malley, Cell 18:829(1979).
:        Efstradiadis, Cell 21:653(1980).
:
:        EUKARYOTIC MRNA SPLICE SITES-
:        Steitz, Nature 283:223(1980).
:        Breathnach and Chambon, Ann. Rev. Biochem. 50:349(1981).
:        Mount, Nuc. Acids Res. 10:459(1982).
:        Shapiro and Senapathy, Nuc. Acids Res. 15:7155(1987).
:
:        CONSENSUS HIGHER EUKARYOTIC TRANSLATIONAL INITIATION SITE-
:        Kozak, M.  Nuc. Acids Res. 9:5233-5252 (1981).
:        Kozak, M.  Nuc. Acids Res. 12:857-872 (1984).
:
:        ENHANCER FACTOR BINDING SITES-
:   Sp1  Dynan, W.S. and Tjian, R. Cell 35:79-87 (1983)
:        Gidoni, D., Dynan, W.S. and Tjian, R. Nature 312:409-413 (1984)
:   Ap-1 Lee, W., Mitchell, P. and Tjian, R. Cell 49:741-752 (1987)
:   Ap-2 Mitchell, P.J., Wang, C. and Tjian, R. Cell 50:847-861 (1987)
:
:
5,-70 Region,CCAAT,0,ATTGG,0
6,GCN4 Site,TGACTC,0,GAGTCA,0
6,SP1 Site,GGGCGG,0,CCGCCC,0
7,TATA,TATAWAW,0,WTWTATA,0
7,AP-1 Site,TGASTCA,0
8,AP-2 Site,CCSCRGGC,0,GCCYGSGG,0
8,5'-Splice,AGGTRAGT,0,ACTYACCT,0
9,mRNA Start,YYCAYYYYY,0,RRRRRTGRR,0
10,XlatStart,GCCRCCATGG,0,CCATGGYGGC,0
15,3'-Splice,YYTTYYYYYYNCAGG,0,CCTGNRRRRRRAARR,0
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